Basic Information
Locus ID:
gene-QYE76_049862
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 51720821 | 51727597 | + | gene-QYE76_049862 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 147,187.30 Da | 67.64 | 51.13 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 802 | 931 | 5.9845E-62 | - |
| CDD | cd00201 | WW | 23 | 50 | 8.37059E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 607 | 777 | 1.2E-47 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 814 | 922 | 1.0E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 53 | 1.96E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 655 | 938 | 3.25E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 794 | 964 | 1.3E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 557 | 793 | 3.7E-86 | IPR027417 |
| SMART | SM00487 | ultradead3 | 602 | 805 | 4.2E-63 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 52 | 6.5E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 842 | 922 | 3.0E-33 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 52 | 10.915601 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 614 | 788 | 30.364693 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 817 | 961 | 25.412273 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 583 | 611 | 10.840833 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 734 | 742 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1115 | 1287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1230 | 1252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1330 | 1375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1164 | 1225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1253 | 1271 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_047056864.1 | DEAD-box ATP-dependent RNA helicase 40-like [Lolium rigidum] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0Q3FTV5 | DEAD-box ATP-dependent RNA helicase 40 OS=Brachypodium distachyon OX=15368 GN=100835845 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology