halophFGD

Basic Information

Locus ID: gene-QYE76_049160

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Plant mobile domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	29028518	29036675	+	gene-QYE76_049160

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.44	180,319.17 Da	51.20	69.78	-0.56

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	74	118	3.1E-8	IPR001810
Pfam	PF10536	Plant mobile domain	975	1310	5.0E-51	IPR019557
Pfam	PF03108	MuDR family transposase	385	448	2.6E-8	IPR004332
Pfam	PF00646	F-box domain	25	67	4.1E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	11	66	1.83E-11	IPR036047
SUPERFAMILY	SSF81383	F-box domain	72	114	1.31E-11	IPR036047
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	859	886	3.14E-5	IPR036875
Gene3D	G3DSA:1.20.1280.50	-	74	115	2.9E-7	-
Gene3D	G3DSA:1.20.1280.50	-	25	65	6.6E-6	-
SMART	SM00256	fbox_2	29	68	0.003	IPR001810
SMART	SM00256	fbox_2	78	118	2.9E-5	IPR001810
SMART	SM00575	26again6	766	793	8.6E-6	IPR006564
ProSiteProfiles	PS50181	F-box domain profile.	72	108	10.080346	IPR001810
ProSiteProfiles	PS50966	Zinc finger SWIM-type profile.	754	791	9.247813	IPR007527
ProSiteProfiles	PS50181	F-box domain profile.	23	78	9.338503	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	1573	1591	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	21	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	334	351	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1544	1591	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1414	1447	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1414	1471	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	326	362	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	278	299	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48120.1	hydrolases;protein serine/threonine phosphatases.
RefSeq	XP_051203757.1	serine/threonine-protein phosphatase 7 long form homolog [Lolium perenne]
Swiss-Prot	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1
TrEMBL	Q6AT53	Putative transposase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0092N01.19 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	40	gene-QYE76_003106, gene-QYE76_004905, gene-QYE76_007129 ... gene-QYE76_007459, gene-QYE76_007460, gene-QYE76_007678, gene-QYE76_008699, gene-QYE76_009652, gene-QYE76_010827, gene-QYE76_011172, gene-QYE76_016027, gene-QYE76_017898, gene-QYE76_024787, gene-QYE76_026183, gene-QYE76_031125, gene-QYE76_031920, gene-QYE76_031925, gene-QYE76_032983, gene-QYE76_034251, gene-QYE76_035075, gene-QYE76_036400, gene-QYE76_037581, gene-QYE76_037987, gene-QYE76_037998, gene-QYE76_037999, gene-QYE76_040991, gene-QYE76_041373, gene-QYE76_041718, gene-QYE76_045280, gene-QYE76_047443, gene-QYE76_049160, gene-QYE76_051154, gene-QYE76_054532, gene-QYE76_058190, gene-QYE76_059907, gene-QYE76_060651, gene-QYE76_062629, gene-QYE76_067714, gene-QYE76_069777, gene-QYE76_071208
Poaceae	Oryza coarctata	1	Oco04G018420
Poaceae	Triticum dicoccoides	1	gene_TRIDC5BG047900