Basic Information
Locus ID:
gene-QYE76_049155
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 28863552 | 28866599 | - | gene-QYE76_049155 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 33,434.19 Da | 33.99 | 72.82 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 186 | 303 | 2.42493E-40 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 186 | 303 | 1.7E-21 | IPR001229 |
| Pfam | PF03145 | Seven in absentia protein family | 63 | 111 | 9.2E-8 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 73 | 112 | 8.5E-11 | - |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 163 | 302 | 2.75E-37 | IPR036404 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 72 | 4.3E-5 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 121 | 7.3E-10 | IPR013083 |
| Gene3D | G3DSA:2.100.10.30 | - | 150 | 303 | 1.4E-44 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 175 | 304 | 8.8E-19 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 164 | 304 | 35.601383 | IPR001229 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_051220316.1 | jacalin-related lectin 3-like [Lolium perenne] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | M7YV66 | Mannose/glucose-specific lectin OS=Triticum urartu OX=4572 GN=TRIUR3_09359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology