Basic Information
Locus ID:
gene-QYE76_049109
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 27551328 | 27554565 | - | gene-QYE76_049109 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 72,402.86 Da | 45.64 | 75.73 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 382 | 561 | 2.15087E-71 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 399 | 559 | 1.9E-20 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 342 | 620 | 6.58E-92 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 343 | 486 | 4.4E-65 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 573 | 627 | 5.6E-9 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 424 | 561 | 4.4E-65 | IPR043128 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 380 | 561 | 8.547633 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 216 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024172049.1 | uncharacterized protein K02A2.6-like [Rosa chinensis] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | Q8S7Z2 | Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0015O22.11 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |