Basic Information
Locus ID:
gene-QYE76_048876
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19540223 | 19551480 | - | gene-QYE76_048876 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 113,169.16 Da | 45.29 | 79.64 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 897 | 990 | 9.54146E-17 | - |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 897 | 990 | 1.4E-6 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 894 | 998 | 8.26E-8 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 875 | 1011 | 3.4E-24 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 265 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_045089081.1 | uncharacterized protein LOC123497118 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A533HS20 | Retrotransposon gag domain-containing protein (Fragment) OS=Gemella sp. OX=1966354 GN=DI638_10665 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 35 | gene-QYE76_002238, gene-QYE76_002580, gene-QYE76_006006 ... |