Basic Information
Locus ID:
gene-QYE76_048451
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3861202 | 3866680 | + | gene-QYE76_048451 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 103,062.81 Da | 48.68 | 71.06 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 447 | 501 | 2.48507E-26 | - |
| Pfam | PF01426 | BAH domain | 181 | 302 | 2.0E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 448 | 502 | 2.2E-8 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 512 | 873 | 3.0E-32 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 438 | 502 | 2.1E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 346 | 873 | 1.48E-73 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 666 | 839 | 1.8E-237 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 347 | 893 | 1.8E-237 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 117 | 288 | 5.8E-45 | IPR043151 |
| SMART | SM00298 | chromo_7 | 446 | 505 | 7.8E-7 | IPR000953 |
| SMART | SM00439 | BAH_4 | 179 | 303 | 6.9E-14 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 179 | 303 | 17.184673 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 345 | 880 | 45.376682 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 447 | 500 | 11.761101 | IPR000953 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 560 | 574 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 346 | 362 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 606 | 619 | 1.1E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 148 | - | - |
| Coils | Coil | Coil | 72 | 94 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_047057851.1 | DNA (cytosine-5)-methyltransferase CMT1-like [Lolium rigidum] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2DU51 | DNA (cytosine-5-)-methyltransferase OS=Brachypodium distachyon OX=15368 GN=BRADI_1g68985v3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology