Basic Information
Locus ID:
gene-QYE76_048450
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3806130 | 3816060 | + | gene-QYE76_048450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 167,814.23 Da | 50.57 | 82.47 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1171 | 1283 | 3.26433E-50 | - |
| CDD | cd00303 | retropepsin_like | 972 | 1049 | 1.80127E-6 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1140 | 1238 | 3.9E-34 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 672 | 762 | 4.2E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1050 | 1272 | 8.89E-72 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 969 | 1083 | 1.3E-7 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 1086 | 1179 | 1.2E-27 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| Coils | Coil | Coil | 71 | 119 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
| Coils | Coil | Coil | 1361 | 1381 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051205490.1 | uncharacterized protein LOC127319565 [Lolium perenne] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A7H4LGS0 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS2418 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |