Basic Information
Locus ID:
gene-QYE76_048188
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_146 | 72844 | 80128 | + | gene-QYE76_048188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 46,393.91 Da | 28.76 | 72.04 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 144 | 424 | 1.90944E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 176 | 4.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 297 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 336 | 0.0084 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 110 | 142 | 2.62E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 425 | 3.85E-48 | IPR036322 |
| Gene3D | G3DSA:2.30.30.1190 | - | 100 | 137 | 5.4E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 280 | 3.1E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 281 | 431 | 6.3E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 179 | 214 | 190.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 24 | 48 | 0.39 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 107 | 132 | 0.0019 | IPR000571 |
| SMART | SM00320 | WD40_4 | 387 | 424 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 337 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 384 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 297 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 253 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 137 | 176 | 8.3E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 300 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 144 | 185 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 105 | 133 | 13.610065 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 144 | 176 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 306 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 10.42716 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 163 | 177 | 8.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 324 | 338 | 8.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 284 | 298 | 8.5E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_047081749.1 | zinc finger CCCH domain-containing protein 17-like [Lolium rigidum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6QJA1 | Zinc finger CCCH domain-containing protein 48-like OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology