Basic Information
Locus ID:
gene-QYE76_048005
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 336982712 | 336990611 | + | gene-QYE76_048005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 125,487.05 Da | 43.05 | 78.19 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 484 | 5.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 920 | 953 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 411 | 952 | 1.52E-43 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 894 | 1105 | 4.45E-13 | IPR011048 |
| Gene3D | G3DSA:2.130.10.10 | - | 291 | 564 | 7.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 565 | 687 | 1.0E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 765 | 1108 | 8.0E-28 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.5E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 626 | 661 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 7.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 574 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 871 | 911 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 528 | 0.05 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 484 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 437 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 868 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1004 | 1046 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 617 | 6.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 921 | 962 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 921 | 955 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 493 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.166971 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 450 | 489 | 8.544697 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 471 | 485 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1139 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_047077469.1 | protein TOPLESS-RELATED PROTEIN 2 [Lolium rigidum] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | M8CAY8 | Protein TOPLESS OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology