Basic Information
Locus ID:
gene-QYE76_047983
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 336203370 | 336206533 | + | gene-QYE76_047983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 108,902.99 Da | 52.76 | 66.41 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 788 | 870 | 2.65565E-15 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 260 | 334 | 6.3E-13 | IPR005162 |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 788 | 869 | 3.0E-7 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 788 | 875 | 4.42E-13 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 783 | 899 | 1.1E-15 | IPR021109 |
| ProSiteProfiles | PS50175 | Aspartyl protease, retroviral-type family profile. | 787 | 868 | 8.509252 | IPR001995 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 684 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051191609.1 | uncharacterized protein LOC127305246 [Lolium perenne] | 0 |
| TrEMBL | A0A2S3IRQ1 | Ribonuclease H OS=Panicum hallii OX=206008 GN=PAHAL_9G466200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |