Basic Information
Locus ID:
gene-QYE76_047540
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 323607550 | 323614744 | - | gene-QYE76_047540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 148,626.44 Da | 43.88 | 82.56 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 722 | 843 | 8.58258E-32 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 724 | 845 | 1.2E-22 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 705 | 886 | 9.91E-36 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 678 | 927 | 2.0E-68 | IPR016135 |
| SMART | SM00212 | ubc_7 | 722 | 902 | 3.4E-17 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 719 | 879 | 30.900288 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1278 | 1302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 315 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16920.1 | ubiquitin-conjugating enzyme 23. | 0 |
| RefSeq | XP_047063486.1 | probable ubiquitin-conjugating enzyme E2 23 [Lolium rigidum] | 0 |
| Q9ZVX1 | Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana OX=3702 GN=UBC23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6GLD5 | UBC core domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH05.3665 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0210000.1, HORVU.MOREX.r3.3HG0223690.1 |
| Poaceae | Lolium multiflorum | 11 | gene-QYE76_008216, gene-QYE76_026496, gene-QYE76_047469 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06120.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203400 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G971600, Tel3E01G051900 |
| Poaceae | Triticum aestivum | 17 | TraesCS2A02G403400.1, TraesCS2A02G586300.1 ... |