halophFGD

Basic Information

Locus ID: gene-QYE76_046668

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Cullin family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	298542901	298543627	+	gene-QYE76_046668

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.84	22,667.54 Da	46.57	90.48	-0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00888	Cullin family	31	195	2.5E-26	IPR001373
SUPERFAMILY	SSF74788	Cullin repeat-like	31	203	9.42E-29	IPR016159
Gene3D	G3DSA:1.20.1310.10	Cullin Repeats	18	144	1.3E-26	-

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process)

Molecular Function:

GO:0031625 (ubiquitin protein ligase binding)

KEGG Pathway

KO Term:

K03869 (cullin 3)

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G26830.1	cullin 3. Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.	0
RefSeq	XP_051212870.1	cullin-3A-like [Lolium perenne]	0
Swiss-Prot	Q9ZVH4	Cullin-3A OS=Arabidopsis thaliana OX=3702 GN=CUL3A PE=1 SV=1	0
TrEMBL	A0A0D9ZRI0	Cullin domain-containing protein OS=Oryza glumipatula OX=40148 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	7	AH07.316, AH07.318, AH07.319, BH07.413, CH03.4503, CH03.4504 ... CH03.4505
Poaceae	Lolium multiflorum	2	gene-QYE76_046640, gene-QYE76_046668
Poaceae	Oryza sativa	1	LOC_Os04g55000.1