Basic Information
Locus ID:
gene-QYE76_046433
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 292457339 | 292463337 | + | gene-QYE76_046433 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 117,345.09 Da | 46.97 | 77.76 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 302 | 655 | 1.30699E-88 | - |
| CDD | cd18793 | SF2_C_SNF | 871 | 1013 | 1.19679E-53 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 316 | 732 | 1.5E-70 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 907 | 1003 | 1.3E-12 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 771 | 826 | 3.76E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 276 | 655 | 4.02E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 663 | 1059 | 1.13E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 272 | 361 | 4.5E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 670 | 1054 | 6.2E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 420 | 520 | 4.9E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 751 | 829 | 4.8E-8 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 524 | 669 | 5.3E-31 | IPR038718 |
| SMART | SM00490 | helicmild6 | 920 | 1003 | 1.1E-16 | IPR001650 |
| SMART | SM00184 | ring_2 | 772 | 820 | 1.3E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 298 | 622 | 1.6E-23 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 772 | 821 | 11.087743 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 896 | 1055 | 13.755498 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 439 | 617 | 11.383032 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 798 | 807 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_047065924.1 | helicase-like transcription factor CHR28 isoform X1 [Lolium rigidum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0Q3EAD5 | Helicase-like transcription factor CHR28 OS=Brachypodium distachyon OX=15368 GN=100833230 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology