Basic Information
Locus ID:
gene-QYE76_044525
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 232052840 | 232058456 | - | gene-QYE76_044525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 127,686.36 Da | 43.67 | 81.43 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05183 | RNA dependent RNA polymerase | 378 | 959 | 6.3E-174 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 8 | 97 | 8.97E-5 | IPR035979 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 95 | 8.72287 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1114 | 1136 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_051217726.1 | probable RNA-dependent RNA polymerase 2 isoform X1 [Lolium perenne] | 0 |
| Q7XM31 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HU92 | RNA-dependent RNA polymerase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology