halophFGD

Basic Information

Locus ID: gene-QYE76_044482

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	230735257	230747539	-	gene-QYE76_044482

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.89	253,790.38 Da	49.93	84.56	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09274	RNase_HI_RT_Ty3	1762	1880	1.75103E-56	-
CDD	cd00303	retropepsin_like	1273	1370	2.02926E-12	-
Pfam	PF03732	Retrotransposon gag protein	973	1063	1.4E-9	IPR005162
Pfam	PF14223	gag-polypeptide of LTR copia-type	194	284	1.3E-6	-
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	1732	1829	1.5E-33	IPR041577
SUPERFAMILY	SSF56672	DNA/RNA polymerases	1539	1863	2.33E-75	IPR043502
SUPERFAMILY	SSF50630	Acid proteases	1269	1378	6.88E-5	IPR021109
Gene3D	G3DSA:3.30.70.270	-	1619	1695	1.8E-16	IPR043128
Gene3D	G3DSA:2.40.70.10	Acid Proteases	1254	1394	3.4E-17	IPR021109
Gene3D	G3DSA:3.10.20.370	-	1756	1830	2.2E-9	-
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	1531	1618	7.3E-15	-
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	421	434	9.075821	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	51	71	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	457	504	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	389	416	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	29	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	83	105	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	880	920	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	457	503	-	-
Coils	Coil	Coil	861	881	-	-
Coils	Coil	Coil	2051	2071	-	-
Coils	Coil	Coil	593	638	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_038976409.1	uncharacterized protein LOC113461320 [Phoenix dactylifera]
Swiss-Prot	Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
TrEMBL	A0A8B8ZYQ0	RNA-directed DNA polymerase OS=Phoenix dactylifera OX=42345 GN=LOC113461320 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	112	gene-QYE76_000435, gene-QYE76_001231, gene-QYE76_002540 ... gene-QYE76_002906, gene-QYE76_004013, gene-QYE76_004245, gene-QYE76_004470, gene-QYE76_004504, gene-QYE76_004659, gene-QYE76_004829, gene-QYE76_007022, gene-QYE76_007346, gene-QYE76_007868, gene-QYE76_008444, gene-QYE76_009909, gene-QYE76_010480, gene-QYE76_010781, gene-QYE76_011868, gene-QYE76_012357, gene-QYE76_012464, gene-QYE76_012974, gene-QYE76_013433, gene-QYE76_013553, gene-QYE76_013715, gene-QYE76_013980, gene-QYE76_014180, gene-QYE76_014307, gene-QYE76_014441, gene-QYE76_014730, gene-QYE76_015024, gene-QYE76_015651, gene-QYE76_016925, gene-QYE76_017717, gene-QYE76_021302, gene-QYE76_022708, gene-QYE76_023965, gene-QYE76_024041, gene-QYE76_024291, gene-QYE76_024449, gene-QYE76_024496, gene-QYE76_024759, gene-QYE76_024838, gene-QYE76_026599, gene-QYE76_028145, gene-QYE76_028896, gene-QYE76_029364, gene-QYE76_029443, gene-QYE76_030456, gene-QYE76_032336, gene-QYE76_032366, gene-QYE76_033749, gene-QYE76_033790, gene-QYE76_034303, gene-QYE76_035451, gene-QYE76_035826, gene-QYE76_038712, gene-QYE76_038850, gene-QYE76_039001, gene-QYE76_039782, gene-QYE76_040556, gene-QYE76_040877, gene-QYE76_040916, gene-QYE76_041471, gene-QYE76_041588, gene-QYE76_041589, gene-QYE76_041893, gene-QYE76_042050, gene-QYE76_042385, gene-QYE76_043720, gene-QYE76_043790, gene-QYE76_044482, gene-QYE76_046041, gene-QYE76_046102, gene-QYE76_048022, gene-QYE76_049479, gene-QYE76_049925, gene-QYE76_050086, gene-QYE76_051824, gene-QYE76_051915, gene-QYE76_051958, gene-QYE76_052119, gene-QYE76_052218, gene-QYE76_054375, gene-QYE76_054624, gene-QYE76_054745, gene-QYE76_055510, gene-QYE76_056511, gene-QYE76_056535, gene-QYE76_057080, gene-QYE76_059367, gene-QYE76_059583, gene-QYE76_060009, gene-QYE76_060642, gene-QYE76_061318, gene-QYE76_062390, gene-QYE76_063337, gene-QYE76_063439, gene-QYE76_063947, gene-QYE76_064310, gene-QYE76_064329, gene-QYE76_065000, gene-QYE76_065542, gene-QYE76_066216, gene-QYE76_066786, gene-QYE76_067566, gene-QYE76_069050, gene-QYE76_069638, gene-QYE76_069704, gene-QYE76_069889, gene-QYE76_070414, gene-QYE76_071122, gene-QYE76_071930