halophFGD

Basic Information

Locus ID: gene-QYE76_044293

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	224826007	224833527	+	gene-QYE76_044293

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.61	86,052.86 Da	40.02	63.64	-0.62

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00098	Zinc knuckle	700	716	8.1E-5	IPR001878
Pfam	PF14223	gag-polypeptide of LTR copia-type	506	641	5.6E-20	-
Pfam	PF14223	gag-polypeptide of LTR copia-type	128	263	5.0E-16	-
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	687	722	3.29E-7	IPR036875
Gene3D	G3DSA:4.10.60.10	-	692	739	1.8E-5	-
SMART	SM00343	c2hcfinal6	700	716	0.0011	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	701	716	9.603271	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	280	304	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	317	340	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	648	662	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	284	299	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	671	686	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	640	694	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description
TAIR	AT5G48050.1
RefSeq	XP_051211709.1	uncharacterized protein LOC127329213 [Lolium perenne]
TrEMBL	A0A7H4LKR9	Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS3822 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Casuarinaceae	Casuarina glauca	1	Cgl02G1953
Poaceae	Lolium multiflorum	59	gene-QYE76_000611, gene-QYE76_000731, gene-QYE76_000814 ... gene-QYE76_000818, gene-QYE76_001036, gene-QYE76_001587, gene-QYE76_001965, gene-QYE76_002171, gene-QYE76_002498, gene-QYE76_003753, gene-QYE76_004144, gene-QYE76_004452, gene-QYE76_007515, gene-QYE76_009620, gene-QYE76_009808, gene-QYE76_010372, gene-QYE76_011474, gene-QYE76_012386, gene-QYE76_012718, gene-QYE76_016361, gene-QYE76_016591, gene-QYE76_017228, gene-QYE76_022282, gene-QYE76_022694, gene-QYE76_023442, gene-QYE76_023583, gene-QYE76_024608, gene-QYE76_027537, gene-QYE76_028138, gene-QYE76_031171, gene-QYE76_031263, gene-QYE76_031911, gene-QYE76_032503, gene-QYE76_033169, gene-QYE76_033541, gene-QYE76_033861, gene-QYE76_034216, gene-QYE76_035076, gene-QYE76_036366, gene-QYE76_042151, gene-QYE76_043182, gene-QYE76_044293, gene-QYE76_052034, gene-QYE76_053577, gene-QYE76_053942, gene-QYE76_054068, gene-QYE76_055466, gene-QYE76_056540, gene-QYE76_057182, gene-QYE76_057238, gene-QYE76_057398, gene-QYE76_060767, gene-QYE76_060788, gene-QYE76_063325, gene-QYE76_063928, gene-QYE76_065623, gene-QYE76_066085, gene-QYE76_066268, gene-QYE76_066930