Basic Information
Locus ID:
gene-QYE76_044079
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 217842867 | 217846945 | - | gene-QYE76_044079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 99,381.15 Da | 42.63 | 75.42 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 114 | 251 | 5.1E-16 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 565 | 807 | 1.7E-69 | IPR013103 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 52 | 88 | 1.5E-6 | IPR029472 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 565 | 912 | 1.45E-31 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 629 | 754 | 3.2E-5 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 656 | 683 | 3.2E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 501 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_021319227.1 | uncharacterized protein LOC110436454 [Sorghum bicolor] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | Q94LQ7 | Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g40800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 25 | gene-QYE76_002067, gene-QYE76_002068, gene-QYE76_008283 ... |