Basic Information
Locus ID:
gene-QYE76_043452
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 195292853 | 195296893 | - | gene-QYE76_043452 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 50,927.66 Da | 47.11 | 75.35 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 41 | 330 | 1.4E-84 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 22 | 386 | 2.16E-122 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 13 | 399 | 8.7E-134 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 11 | 457 | 2.9E-200 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 150 | 173 | 1.9E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 267 | 277 | 1.9E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 182 | 197 | 1.9E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 107 | 124 | 7.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 228 | 241 | 7.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 43 | 60 | 7.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 245 | 263 | 7.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 128 | 148 | 7.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 76 | 94 | 7.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 169 | 185 | 7.8E-59 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 417 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_047065894.1 | histone deacetylase 6-like [Lolium rigidum] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | W5H1E2 | Histone deacetylase OS=Triticum aestivum OX=4565 GN=HDA6-A PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology