Basic Information
Locus ID:
gene-QYE76_042985
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 177954774 | 177962408 | + | gene-QYE76_042985 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 38,030.32 Da | 43.67 | 74.23 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 197 | 241 | 7.6E-12 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 136 | 241 | 1.27E-37 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 144 | 228 | 4.4E-31 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 345 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040243892.1 | uncharacterized protein LOC120963339 [Aegilops tauschii subsp. strangulata] | 0 |
| P92523 | Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8R7Q169 | Reverse transcriptase domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 33 | gene-QYE76_000029, gene-QYE76_000961, gene-QYE76_010060 ... |