Basic Information
Locus ID:
gene-QYE76_042862
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 173054251 | 173058886 | + | gene-QYE76_042862 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 135,343.73 Da | 50.85 | 72.00 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 889 | 1068 | 9.99872E-70 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1133 | 1177 | 2.5E-7 | IPR041577 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 906 | 1066 | 5.3E-20 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 849 | 1180 | 3.0E-105 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 1080 | 1161 | 4.5E-20 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 931 | 1068 | 1.4E-64 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 850 | 993 | 1.4E-64 | - |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 887 | 1068 | 8.547633 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 618 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051191609.1 | uncharacterized protein LOC127305246 [Lolium perenne] | 0 |
| Q99315 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3 | 0 | |
| TrEMBL | A0A2T7AA45 | Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |