Basic Information
Locus ID:
gene-QYE76_042586
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 163918610 | 163921794 | - | gene-QYE76_042586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 117,678.36 Da | 49.31 | 68.43 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 874 | 967 | 1.84852E-18 | - |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 875 | 966 | 2.1E-10 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 871 | 972 | 2.89E-16 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 858 | 995 | 2.0E-20 | IPR021109 |
| ProSiteProfiles | PS50175 | Aspartyl protease, retroviral-type family profile. | 884 | 965 | 8.610009 | IPR001995 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 886 | 897 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 718 | 750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 609 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051191609.1 | uncharacterized protein LOC127305246 [Lolium perenne] | 0 |
| TrEMBL | A0A2T7AA45 | Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |