halophFGD

Basic Information

Locus ID: gene-QYE76_042151

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	147467300	147472843	+	gene-QYE76_042151

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.23	90,145.15 Da	36.41	79.46	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09272	RNase_HI_RT_Ty1	401	461	3.78445E-20	-
Pfam	PF14223	gag-polypeptide of LTR copia-type	568	703	3.5E-20	-
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	74	316	5.6E-69	IPR013103
Pfam	PF00098	Zinc knuckle	762	778	8.2E-5	IPR001878
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	749	784	2.72E-7	IPR036875
SUPERFAMILY	SSF56672	DNA/RNA polymerases	74	425	5.34E-17	IPR043502
Gene3D	G3DSA:4.10.60.10	-	754	792	1.6E-5	-
SMART	SM00343	c2hcfinal6	762	778	0.0011	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	763	778	9.603271	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	723	754	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	29	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	733	748	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_023158131.2	uncharacterized protein LOC103653943 isoform X1 [Zea mays]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	A0A453JLB8	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Casuarinaceae	Casuarina glauca	1	Cgl02G1953
Poaceae	Lolium multiflorum	59	gene-QYE76_000611, gene-QYE76_000731, gene-QYE76_000814 ... gene-QYE76_000818, gene-QYE76_001036, gene-QYE76_001587, gene-QYE76_001965, gene-QYE76_002171, gene-QYE76_002498, gene-QYE76_003753, gene-QYE76_004144, gene-QYE76_004452, gene-QYE76_007515, gene-QYE76_009620, gene-QYE76_009808, gene-QYE76_010372, gene-QYE76_011474, gene-QYE76_012386, gene-QYE76_012718, gene-QYE76_016361, gene-QYE76_016591, gene-QYE76_017228, gene-QYE76_022282, gene-QYE76_022694, gene-QYE76_023442, gene-QYE76_023583, gene-QYE76_024608, gene-QYE76_027537, gene-QYE76_028138, gene-QYE76_031171, gene-QYE76_031263, gene-QYE76_031911, gene-QYE76_032503, gene-QYE76_033169, gene-QYE76_033541, gene-QYE76_033861, gene-QYE76_034216, gene-QYE76_035076, gene-QYE76_036366, gene-QYE76_042151, gene-QYE76_043182, gene-QYE76_044293, gene-QYE76_052034, gene-QYE76_053577, gene-QYE76_053942, gene-QYE76_054068, gene-QYE76_055466, gene-QYE76_056540, gene-QYE76_057182, gene-QYE76_057238, gene-QYE76_057398, gene-QYE76_060767, gene-QYE76_060788, gene-QYE76_063325, gene-QYE76_063928, gene-QYE76_065623, gene-QYE76_066085, gene-QYE76_066268, gene-QYE76_066930