Basic Information
Locus ID:
gene-QYE76_041618
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 123699267 | 123710431 | - | gene-QYE76_041618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 109,091.74 Da | 50.11 | 85.54 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 631 | 747 | 1.40861E-53 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 119 | 207 | 4.0E-9 | IPR005162 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 600 | 698 | 2.3E-34 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 479 | 732 | 1.0E-82 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 546 | 639 | 6.9E-28 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 398 | 543 | 7.8E-20 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 933 | 960 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 933 | 967 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 78 | - | - |
| Coils | Coil | Coil | 828 | 855 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A6D2K7T5 | RT_RNaseH domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS31182 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |