Basic Information
Locus ID:
gene-QYE76_041489
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 118953503 | 118960581 | + | gene-QYE76_041489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 174,593.48 Da | 49.83 | 74.48 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1529 | 1570 | 3.52071E-20 | - |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 256 | 389 | 2.0E-17 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1200 | 1443 | 3.4E-75 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1214 | 1566 | 1.78E-19 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1044 | 1059 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1015 | 1059 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 695 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1016 | 1043 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 444 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_051211614.1 | uncharacterized protein LOC127329110 [Lolium perenne] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1P8YYL6 | Reverse transcriptase (Fragment) OS=Zea mays OX=4577 GN=FGENESH_41 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 28 | gene-QYE76_000512, gene-QYE76_000878, gene-QYE76_001935 ... |