Basic Information
Locus ID:
gene-QYE76_040941
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 97512869 | 97519895 | - | gene-QYE76_040941 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 119,933.44 Da | 47.95 | 82.89 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 734 | 852 | 4.91179E-57 | - |
| CDD | cd00303 | retropepsin_like | 331 | 428 | 1.5219E-12 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 703 | 801 | 2.5E-34 | IPR041577 |
| SUPERFAMILY | SSF50630 | Acid proteases | 328 | 436 | 4.28E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 572 | 835 | 5.11E-85 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 537 | 646 | 2.3E-23 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 312 | 450 | 3.6E-18 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 649 | 742 | 7.7E-28 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 28 | - | - |
| Coils | Coil | Coil | 939 | 959 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A8T2CR70 | Ribonuclease H-like superfamily OS=Arabidopsis suecica OX=45249 GN=ISN44_As06g035770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |