Basic Information
Locus ID:
gene-QYE76_039724
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 52603296 | 52607483 | + | gene-QYE76_039724 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 46,203.22 Da | 37.69 | 71.58 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 269 | 342 | 2.94493E-32 | - |
| CDD | cd12352 | RRM1_TIA1_like | 63 | 133 | 4.93634E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 147 | 222 | 1.8069E-45 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 63 | 129 | 5.8E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 148 | 219 | 1.1E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 270 | 336 | 2.4E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 254 | 344 | 3.76E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 139 | 232 | 2.42E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 51 | 139 | 7.12E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 146 | 232 | 1.1E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 245 | 347 | 9.0E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 145 | 3.4E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 62 | 131 | 8.8E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 147 | 221 | 6.5E-22 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 269 | 338 | 2.7 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 147 | 221 | 0.022 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 269 | 338 | 6.2E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 146 | 225 | 17.182348 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 61 | 135 | 15.272143 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 268 | 342 | 15.169811 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_051214960.1 | oligouridylate-binding protein 1-like [Lolium perenne] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | W5CA19 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS1589 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology