Basic Information
Locus ID:
gene-QYE76_039683
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 51369130 | 51376688 | + | gene-QYE76_039683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 160,206.20 Da | 49.89 | 71.18 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 382 | 558 | 1.23445E-90 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 398 | 557 | 1.8E-27 | IPR000477 |
| Pfam | PF00098 | Zinc knuckle | 271 | 287 | 1.4E-6 | IPR001878 |
| Pfam | PF03732 | Retrotransposon gag protein | 80 | 176 | 8.9E-18 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 326 | 635 | 1.89E-128 | IPR043502 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 265 | 291 | 4.54E-7 | IPR036875 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1325 | 1410 | 2.11E-21 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 568 | 646 | 1.4E-26 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 343 | 483 | 7.9E-89 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1317 | 1410 | 1.3E-23 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 267 | 314 | 3.5E-7 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 423 | 558 | 7.9E-89 | IPR043128 |
| SMART | SM00343 | c2hcfinal6 | 271 | 287 | 2.0E-5 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 272 | 287 | 11.383412 | IPR001878 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 378 | 558 | 12.073462 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1197 | 1227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 261 | - | - |
| Coils | Coil | Coil | 1340 | 1360 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040385335.1 | uncharacterized protein LOC107305531 [Oryza brachyantha] | 0 |
| P20825 | Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2S3IRQ1 | Ribonuclease H OS=Panicum hallii OX=206008 GN=PAHAL_9G466200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |