Basic Information
Locus ID:
gene-QYE76_039066
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
SKIP5
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 33631226 | 33633315 | - | gene-QYE76_039066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 27,097.01 Da | 57.28 | 97.65 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 26 | 63 | 7.3E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 63 | 3.79E-13 | IPR036047 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 73 | 171 | 1.31E-11 | IPR011050 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 60 | 3.6E-12 | - |
| Gene3D | G3DSA:2.160.20.10 | - | 69 | 171 | 3.2E-5 | IPR012334 |
| SMART | SM00256 | fbox_2 | 22 | 63 | 0.0065 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54480.1 | SKP1/ASK-interacting protein 5. Encodes an SKP1 interacting partner (SKIP5). | 0 |
| RefSeq | XP_051213911.1 | F-box protein SKIP5 [Lolium perenne] | 0 |
| Q94FT2 | F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6AUD6 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29881 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17176 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032404 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041360 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29952, Sbi_jg43415 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18485 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004247 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66272, Sgl70590 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000012626, gene:ENSEOMG00000021218 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2BG0005850 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166000 |
| Apiaceae | Apium graveolens | 1 | Ag1G00194 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724053 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1620.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | FtriNA14239, FtriNA19948 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54480.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010628m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07940.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g065370.2N, BniB08g068670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0864 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0879 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g03150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0300s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04250 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1974 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039369 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02342 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3959, BH03.4263, CH07.234 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0580270, gene-QOZ80_7BG0611360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0116800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039066 |
| Poaceae | Oryza coarctata | 2 | Oco13G014850, Oco14G015660 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g46555.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G377800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305079 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G003100, Chr0G020900, Chr19G000880, Chr24G013250 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G269000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG015900, gene_TRIDC2BG019190 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G129100.1, TraesCS2B02G151200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb329830_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33174 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5717 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.372, evm.TU.LG17.367 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g05460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28442 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21082 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14046 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.295 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018744 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14964 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22947 |
| Salicaceae | Populus euphratica | 1 | populus_peu04268 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613577 |
| Solanaceae | Solanum chilense | 1 | SOLCI003689000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005079 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13697_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3884 |
| Zosteraceae | Zostera marina | 1 | Zosma01g36250.v3.1 |