Basic Information
Locus ID:
gene-QYE76_038949
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 30174460 | 30178848 | - | gene-QYE76_038949 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 100,049.11 Da | 37.63 | 85.26 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 221 | 488 | 7.78293E-58 | - |
| CDD | cd00303 | retropepsin_like | 686 | 775 | 1.85726E-17 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 227 | 466 | 6.8E-41 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 134 | 456 | 4.0E-16 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 662 | 798 | 3.1E-10 | IPR021109 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 208 | 489 | 13.631385 | IPR000477 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051210835.1 | uncharacterized protein LOC127328263 [Lolium perenne] | 0 |
| P92555 | Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8I6Y3E3 | Reverse transcriptase domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 33 | gene-QYE76_000029, gene-QYE76_000961, gene-QYE76_010060 ... |