Basic Information
Locus ID:
gene-QYE76_038439
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 16929556 | 16940345 | - | gene-QYE76_038439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 111,097.69 Da | 48.94 | 83.37 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 480 | 649 | 2.4631E-58 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 518 | 613 | 3.2E-12 | IPR000477 |
| Pfam | PF03732 | Retrotransposon gag protein | 138 | 228 | 2.5E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 440 | 675 | 7.78E-68 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 539 | 615 | 2.0E-46 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 442 | 599 | 2.0E-46 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 619 | 655 | 1.2E-8 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 978 | - | - |
| Coils | Coil | Coil | 888 | 908 | - | - |
| Coils | Coil | Coil | 911 | 959 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048602259.1 | uncharacterized protein LOC125580969, partial [Brassica napus] | 0 |
| P04323 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A6D2JF28 | Reverse transcriptase domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS29297 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |