Basic Information
Locus ID:
gene-QYE76_038117
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8175587 | 8178831 | + | gene-QYE76_038117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 77,146.54 Da | 49.96 | 79.77 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 186 | 221 | 2.1579E-6 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 186 | 219 | 2.6E-4 | IPR018957 |
| Pfam | PF03732 | Retrotransposon gag protein | 580 | 671 | 1.6E-15 | IPR005162 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 222 | 3.53E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 229 | 8.0E-8 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 229 | 8.653498 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 293 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051191609.1 | uncharacterized protein LOC127305246 [Lolium perenne] | 0 |
| TrEMBL | A0A2T7AA45 | Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |