Basic Information
Locus ID:
gene-QYE76_037509
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_1211 | 45063 | 57658 | - | gene-QYE76_037509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 114,650.48 Da | 49.25 | 84.63 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 446 | 543 | 1.51465E-12 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 146 | 236 | 2.6E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 713 | 825 | 1.02E-23 | IPR043502 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 2 | 129 | 4.23E-36 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 443 | 551 | 3.38E-5 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 427 | 565 | 6.3E-18 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 704 | 842 | 4.7E-29 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 65 | 238 | 6.4E-17 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 1 | 62 | 3.3E-19 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 867 | - | - |
| Coils | Coil | Coil | 975 | 995 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019057734.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104810252 [Tarenaya hassleriana] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A5CBG5 | RNA-directed DNA polymerase OS=Vitis vinifera OX=29760 GN=VITISV_015351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |