Basic Information
Locus ID:
gene-QYE76_036923
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 332076497 | 332082183 | - | gene-QYE76_036923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 107,101.35 Da | 54.92 | 70.11 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 473 | 527 | 9.47602E-25 | - |
| Pfam | PF01426 | BAH domain | 203 | 325 | 9.8E-10 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 473 | 528 | 2.3E-9 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 538 | 899 | 4.2E-33 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 368 | 899 | 4.87E-76 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 461 | 528 | 4.04E-12 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 370 | 919 | 3.6E-236 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 692 | 865 | 3.6E-236 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 136 | 311 | 6.2E-48 | IPR043151 |
| SMART | SM00439 | BAH_4 | 202 | 326 | 2.8E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 472 | 531 | 1.1E-4 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 368 | 906 | 44.040676 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 202 | 326 | 17.55512 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 473 | 526 | 12.231701 | IPR000953 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 369 | 385 | 1.2E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 586 | 600 | 1.2E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 632 | 645 | 1.2E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 188 | - | - |
| Coils | Coil | Coil | 88 | 111 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_047058537.1 | DNA (cytosine-5)-methyltransferase CMT1-like [Lolium rigidum] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2DU51 | DNA (cytosine-5-)-methyltransferase OS=Brachypodium distachyon OX=15368 GN=BRADI_1g68985v3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology