Basic Information
Locus ID:
gene-QYE76_036922
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 332039615 | 332049992 | - | gene-QYE76_036922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 90,300.35 Da | 39.29 | 92.53 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 475 | 731 | 3.07734E-43 | - |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 345 | 426 | 2.9E-6 | IPR000535 |
| Pfam | PF00069 | Protein kinase domain | 35 | 323 | 7.6E-48 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 695 | 731 | 3.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 606 | 645 | 5.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 653 | 690 | 6.6E-4 | IPR001680 |
| SUPERFAMILY | SSF49354 | PapD-like | 337 | 445 | 1.18E-10 | IPR008962 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 480 | 767 | 5.49E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 19 | 326 | 1.52E-64 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 128 | 332 | 3.1E-45 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 336 | 458 | 5.9E-13 | IPR013783 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 105 | 1.1E-23 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 482 | 775 | 2.4E-70 | IPR015943 |
| SMART | SM00320 | WD40_4 | 648 | 690 | 5.2E-6 | IPR001680 |
| SMART | SM00220 | serkin_6 | 34 | 332 | 1.8E-33 | IPR000719 |
| SMART | SM00320 | WD40_4 | 605 | 645 | 1.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 693 | 731 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 560 | 598 | 0.0063 | IPR001680 |
| SMART | SM00320 | WD40_4 | 475 | 513 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 556 | 100.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 655 | 699 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 655 | 692 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 612 | 654 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 612 | 648 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 699 | 731 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 34 | 332 | 36.173866 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 338 | 458 | 9.772763 | IPR000535 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 40 | 63 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 171 | 183 | - | IPR008271 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 677 | 691 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 677 | 691 | 4.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 632 | 646 | 4.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 718 | 732 | 4.5E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21410.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_047087147.1 | uncharacterized protein LOC124698751 isoform X1 [Lolium rigidum] | 0 |
| Q8S9L6 | Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6RSS6 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology