Basic Information
Locus ID:
gene-QYE76_036900
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 331561084 | 331567088 | + | gene-QYE76_036900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 106,790.87 Da | 55.29 | 69.71 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 470 | 524 | 8.45722E-26 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 470 | 525 | 3.5E-9 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 535 | 895 | 1.5E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 200 | 322 | 2.4E-8 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 365 | 896 | 2.37E-74 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 459 | 525 | 7.12E-12 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 107 | 308 | 2.0E-44 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 689 | 862 | 1.1E-207 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 469 | 916 | 1.1E-207 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 367 | 462 | 1.2E-30 | - |
| SMART | SM00298 | chromo_7 | 469 | 528 | 4.9E-6 | IPR000953 |
| SMART | SM00439 | BAH_4 | 198 | 323 | 4.2E-15 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 198 | 323 | 16.60051 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 470 | 523 | 13.064301 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 365 | 903 | 44.65493 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 540 | 552 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 629 | 642 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 583 | 597 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 366 | 382 | 1.1E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 186 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_051205384.1 | DNA (cytosine-5)-methyltransferase CMT1-like isoform X1 [Lolium perenne] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2DU51 | DNA (cytosine-5-)-methyltransferase OS=Brachypodium distachyon OX=15368 GN=BRADI_1g68985v3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology