Basic Information
Locus ID:
gene-QYE76_036882
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 331095336 | 331099641 | + | gene-QYE76_036882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 56,457.33 Da | 49.88 | 88.43 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 35 | 322 | 1.9E-50 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 23 | 360 | 4.1E-68 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 417 | 464 | 3.92E-5 | IPR008962 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 421 | 484 | 1.6E-5 | IPR013783 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 3 | 104 | 2.1E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 128 | 352 | 1.0E-50 | - |
| SMART | SM00220 | serkin_6 | 34 | 330 | 8.9E-37 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 34 | 327 | 36.951237 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 169 | 181 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 40 | 63 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 419 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21410.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_047058508.1 | uncharacterized protein LOC124665146 [Lolium rigidum] | 0 |
| O65405 | Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana OX=3702 GN=CRK28 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6RSS6 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH04.534 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0670760, gene-QOZ80_9AG0675630 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0495000.1, HORVU.MOREX.r3.5HG0495010.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_026497, gene-QYE76_036873, gene-QYE76_036877 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G077900, gene-BS78_05G087600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401770, Pt_Chr0505685 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr31G007950 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G468300, Tel6E01G025100, Tel7E01G888400 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5BG047840, gene_TRIDC5BG047850 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS3A02G094800.1, TraesCS3D02G095000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb201450_P002 |