Basic Information
Locus ID:
gene-QYE76_036800
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 328966047 | 328967121 | - | gene-QYE76_036800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 35,141.94 Da | 46.62 | 87.53 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 38 | 95 | 2.19909E-11 | - |
| Pfam | PF00240 | Ubiquitin family | 37 | 95 | 6.1E-12 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 178 | 234 | 1.3E-4 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 101 | 173 | 3.9E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 35 | 98 | 2.26E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 98 | 176 | 6.45E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 179 | 241 | 4.9E-5 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 98 | 178 | 2.7E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 2 | 97 | 6.2E-16 | - |
| SMART | SM00213 | ubq_7 | 15 | 97 | 1.2E-7 | IPR000626 |
| SMART | SM00213 | ubq_7 | 99 | 174 | 2.1E-5 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 15 | 95 | 14.686717 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 169 | 237 | 10.592941 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 99 | 178 | 13.837477 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 34 | 54 | 4.4E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 55 | 75 | 4.4E-5 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09790.1 | ubiquitin 8. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_051201448.1 | polyubiquitin 11-like [Lolium perenne] | 0 |
| Q39256 | Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8J4GBA3 | Polyubiquitin OS=Volvox reticuliferus OX=1737510 GN=Vretifemale_6369 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018813, gene-QYE76_036770, gene-QYE76_036774 ... |