Basic Information
Locus ID:
gene-QYE76_036534
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 320334987 | 320338627 | + | gene-QYE76_036534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 57,223.52 Da | 46.83 | 61.84 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 463 | 506 | 1.174E-21 | - |
| Pfam | PF01426 | BAH domain | 204 | 324 | 8.9E-10 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 361 | 421 | 8.31E-9 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 450 | 507 | 5.5E-8 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 142 | 311 | 1.0E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 312 | 517 | 1.5E-71 | - |
| SMART | SM00439 | BAH_4 | 202 | 326 | 1.5E-16 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 463 | 506 | 9.209001 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 202 | 326 | 16.3298 | IPR001025 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 117 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_051197690.1 | DNA (cytosine-5)-methyltransferase CMT1-like [Lolium perenne] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6HR94 | DNA (cytosine-5-)-methyltransferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology