Basic Information
Locus ID:
gene-QYE76_036515
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 319829107 | 319835428 | + | gene-QYE76_036515 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 115,248.76 Da | 54.66 | 70.46 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 182 | 488 | 2.82531E-155 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 183 | 487 | 4.8E-42 | IPR001394 |
| Pfam | PF01753 | MYND finger | 81 | 118 | 5.0E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 78 | 122 | 1.92E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 182 | 489 | 6.67E-84 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 68 | 123 | 1.0E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 176 | 494 | 3.0E-88 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 183 | 490 | 48.271652 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 81 | 118 | 11.931067 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 184 | 199 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 81 | 118 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 902 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 790 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 849 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_051197787.1 | uncharacterized protein LOC127311403 [Lolium perenne] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | F2DPJ3 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology