HalophFGD

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Basic Information
Locus ID: gene-QYE76_036097
Species & Taxonomic ID: Lolium multiflorum & 4521
Genome Assembly: GCA_030979885.1
Description: ATPase activity, coupled to transmembrane movement of substances
Maps and Mapping Data
Chromosome Start End Strand ID
chr7 307339292 307354481 + gene-QYE76_036097
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.05 342,500.34 Da 46.88 74.63 -0.56
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd09272 RNase_HI_RT_Ty1 1217 1307 1.05687E-38 -
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 876 1120 2.1E-76 IPR013103
Pfam PF14223 gag-polypeptide of LTR copia-type 111 241 5.7E-15 -
Pfam PF02992 Transposase family tnp2 1681 1767 8.2E-13 IPR004242
Pfam PF02992 Transposase family tnp2 1614 1676 6.0E-21 IPR004242
Pfam PF00665 Integrase core domain 538 635 7.2E-9 IPR001584
Pfam PF13976 GAG-pre-integrase domain 450 521 2.8E-15 IPR025724
SUPERFAMILY SSF53098 Ribonuclease H-like 532 692 1.03E-39 IPR012337
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains 282 311 5.49E-7 IPR036875
SUPERFAMILY SSF56672 DNA/RNA polymerases 876 1297 1.02E-20 IPR043502
Gene3D G3DSA:4.10.60.10 - 258 323 7.8E-7 -
Gene3D G3DSA:3.30.420.10 - 528 715 4.9E-40 IPR036397
SMART SM00343 c2hcfinal6 291 307 0.0048 IPR001878
ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 292 307 9.059338 IPR001878
ProSiteProfiles PS50994 Integrase catalytic domain profile. 521 697 21.967875 IPR001584
MobiDBLite mobidb-lite consensus disorder prediction 802 827 - -
MobiDBLite mobidb-lite consensus disorder prediction 2648 2687 - -
MobiDBLite mobidb-lite consensus disorder prediction 2269 2289 - -
MobiDBLite mobidb-lite consensus disorder prediction 1378 1436 - -
MobiDBLite mobidb-lite consensus disorder prediction 254 288 - -
MobiDBLite mobidb-lite consensus disorder prediction 1856 1877 - -
MobiDBLite mobidb-lite consensus disorder prediction 782 827 - -
MobiDBLite mobidb-lite consensus disorder prediction 260 276 - -
MobiDBLite mobidb-lite consensus disorder prediction 2525 2550 - -
MobiDBLite mobidb-lite consensus disorder prediction 1378 1404 - -
Coils Coil Coil 2282 2309 - -
Gene Ontology
Biological Process:
GO:0015074 (DNA integration)
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)
KEGG Pathway
KO Term:
K05666 (ATP-binding cassette, subfamily C (CFTR/MRP), member 2)
Pathway:
ko01523 (Antifolate resistance) map01523 (Antifolate resistance) ko01524 (Platinum drug resistance) map01524 (Platinum drug resistance) ko02010 (ABC transporters) map02010 (ABC transporters)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G23160.2 - 0
RefSeq XP_051190173.1 uncharacterized protein LOC127303487 [Lolium perenne] 0
Swiss-Prot P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 0
TrEMBL A0A8I6XJV0 Polyprotein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Lolium multiflorum 112 gene-QYE76_001277, gene-QYE76_001352, gene-QYE76_001721 ...
gene-QYE76_002495, gene-QYE76_003541, gene-QYE76_004443, gene-QYE76_004928, gene-QYE76_004941, gene-QYE76_005807, gene-QYE76_005830, gene-QYE76_005831, gene-QYE76_007803, gene-QYE76_008013, gene-QYE76_009230, gene-QYE76_010006, gene-QYE76_011087, gene-QYE76_011088, gene-QYE76_015340, gene-QYE76_015803, gene-QYE76_015804, gene-QYE76_016532, gene-QYE76_017682, gene-QYE76_017873, gene-QYE76_017875, gene-QYE76_018904, gene-QYE76_020250, gene-QYE76_021804, gene-QYE76_021865, gene-QYE76_023256, gene-QYE76_023756, gene-QYE76_023757, gene-QYE76_025100, gene-QYE76_025581, gene-QYE76_025582, gene-QYE76_026848, gene-QYE76_027131, gene-QYE76_027180, gene-QYE76_027298, gene-QYE76_028784, gene-QYE76_029705, gene-QYE76_030814, gene-QYE76_031025, gene-QYE76_031026, gene-QYE76_032944, gene-QYE76_033725, gene-QYE76_033726, gene-QYE76_035656, gene-QYE76_036097, gene-QYE76_037485, gene-QYE76_037940, gene-QYE76_037941, gene-QYE76_038016, gene-QYE76_039089, gene-QYE76_039328, gene-QYE76_040381, gene-QYE76_040873, gene-QYE76_040944, gene-QYE76_041380, gene-QYE76_041616, gene-QYE76_042404, gene-QYE76_042975, gene-QYE76_043639, gene-QYE76_043915, gene-QYE76_043916, gene-QYE76_044922, gene-QYE76_045526, gene-QYE76_046120, gene-QYE76_046263, gene-QYE76_046264, gene-QYE76_047074, gene-QYE76_047159, gene-QYE76_047736, gene-QYE76_048079, gene-QYE76_048135, gene-QYE76_048136, gene-QYE76_052370, gene-QYE76_052992, gene-QYE76_053032, gene-QYE76_053923, gene-QYE76_054108, gene-QYE76_055394, gene-QYE76_056823, gene-QYE76_057935, gene-QYE76_058184, gene-QYE76_058195, gene-QYE76_059337, gene-QYE76_059369, gene-QYE76_061050, gene-QYE76_061051, gene-QYE76_061199, gene-QYE76_061548, gene-QYE76_062122, gene-QYE76_062123, gene-QYE76_062506, gene-QYE76_062507, gene-QYE76_064177, gene-QYE76_064721, gene-QYE76_065021, gene-QYE76_066602, gene-QYE76_066729, gene-QYE76_066913, gene-QYE76_068003, gene-QYE76_068108, gene-QYE76_068932, gene-QYE76_069271, gene-QYE76_070149, gene-QYE76_070150, gene-QYE76_070245, gene-QYE76_070496, gene-QYE76_071305, gene-QYE76_071506, gene-QYE76_071866
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.