Basic Information
Locus ID:
gene-QYE76_036035
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 305266038 | 305273610 | + | gene-QYE76_036035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 106,143.37 Da | 54.25 | 81.98 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 1 | 76 | 3.08719E-51 | - |
| CDD | cd01803 | Ubl_ubiquitin | 153 | 228 | 3.08719E-51 | - |
| CDD | cd01803 | Ubl_ubiquitin | 77 | 152 | 2.67057E-50 | - |
| CDD | cd01803 | Ubl_ubiquitin | 229 | 304 | 3.08719E-51 | - |
| CDD | cd06168 | LSMD1 | 847 | 921 | 1.28192E-23 | IPR034110 |
| Pfam | PF10536 | Plant mobile domain | 374 | 476 | 1.0E-14 | IPR019557 |
| Pfam | PF01423 | LSM domain | 849 | 910 | 6.8E-7 | IPR001163 |
| Pfam | PF00240 | Ubiquitin family | 79 | 150 | 1.6E-32 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 1.2E-32 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 155 | 226 | 1.2E-32 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 231 | 302 | 1.2E-32 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 228 | 305 | 1.76E-33 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 76 | 152 | 1.74E-33 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 152 | 228 | 2.9E-33 | IPR029071 |
| SUPERFAMILY | SSF50182 | Sm-like ribonucleoproteins | 847 | 918 | 2.14E-12 | IPR010920 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 7.26E-33 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 153 | 228 | 1.4E-46 | - |
| Gene3D | G3DSA:2.30.30.100 | - | 846 | 922 | 4.2E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 76 | 5.2E-46 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 229 | 308 | 3.1E-46 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 77 | 152 | 1.4E-46 | - |
| SMART | SM00213 | ubq_7 | 229 | 300 | 3.0E-35 | IPR000626 |
| SMART | SM00213 | ubq_7 | 77 | 148 | 3.3E-35 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 72 | 3.0E-35 | IPR000626 |
| SMART | SM00213 | ubq_7 | 153 | 224 | 3.0E-35 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 229 | 304 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 153 | 228 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 77 | 152 | 30.299679 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 103 | 128 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 27 | 52 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 179 | 204 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 255 | 280 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 5.0E-37 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 5.0E-37 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 5.0E-37 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 748 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05320.1 | polyubiquitin 10. One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. | 0 |
| RefSeq | XP_027114400.1 | polyubiquitin-like [Coffea arabica] | 0 |
| P69322 | Polyubiquitin OS=Pisum sativum OX=3888 GN=PU1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6P6WGR1 | polyubiquitin-like OS=Coffea arabica OX=13443 GN=LOC113732680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22277 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_954 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005300, Ah012634 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g080410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40575, Sbi_jg50603 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2162 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015979 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45143, Sgl49989 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007460, gene:ENSEOMG00000027912 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0004110, CQ.Regalona.r1.4BG0004290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30094650 |
| Apiaceae | Apium graveolens | 1 | Ag7G00931 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697088 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2806.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G09120 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18372.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g15690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g072030.2N, BniB05g018080.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15680 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0285s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09030, gene.Thate04g01360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.861 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001016, Pov_00016280, Pov_00032542, Pov_00034291 |
| Poaceae | Echinochloa crus-galli | 2 | BH06.2487, CH06.2785 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0224810, gene-QOZ80_3BG0270100 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0735450.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_036035, gene-QYE76_059390 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g46390.1 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009730, Chr10G020290, Chr11G002340 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G782600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG064580, gene_TRIDC7BG057750 |
| Poaceae | Triticum aestivum | 2 | TraesCS7A02G462700.1.cds1, TraesCS7D02G450600.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb224700_P001, Zm00001eb273860_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40564, nbis-gene-9750 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30999, Zma_g33252 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1133 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.830 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24993 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12980 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19202 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.38 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16811 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10312 |
| Salicaceae | Populus euphratica | 1 | populus_peu29231 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609188 |
| Solanaceae | Solanum chilense | 2 | SOLCI001460100, SOLCI001984300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028702 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10527, gene_16599 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1049 |
| Zosteraceae | Zostera marina | 1 | Zosma05g27620.v3.1 |