Basic Information
Locus ID:
gene-QYE76_035963
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 302955536 | 302961071 | - | gene-QYE76_035963 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 95,469.01 Da | 37.67 | 79.88 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 397 | 452 | 1.39619E-25 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 397 | 452 | 9.2E-9 | IPR023780 |
| Pfam | PF01426 | BAH domain | 127 | 245 | 5.8E-13 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 462 | 821 | 8.2E-31 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 388 | 452 | 8.64E-10 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 293 | 822 | 9.98E-73 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 67 | 234 | 1.5E-48 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 615 | 788 | 2.6E-217 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 293 | 369 | 2.8E-28 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 396 | 840 | 2.6E-217 | - |
| SMART | SM00298 | chromo_7 | 396 | 455 | 2.5E-5 | IPR000953 |
| SMART | SM00439 | BAH_4 | 125 | 249 | 2.2E-17 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 291 | 829 | 42.873589 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 125 | 249 | 18.566719 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 397 | 450 | 10.9104 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 467 | 479 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 510 | 524 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 292 | 308 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 556 | 569 | 1.1E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 280 | - | - |
| Coils | Coil | Coil | 30 | 50 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_051198652.1 | DNA (cytosine-5)-methyltransferase CMT1-like isoform X2 [Lolium perenne] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2DU51 | DNA (cytosine-5-)-methyltransferase OS=Brachypodium distachyon OX=15368 GN=BRADI_1g68985v3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology