Basic Information
Locus ID:
gene-QYE76_035959
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 302834838 | 302854753 | + | gene-QYE76_035959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 117,501.47 Da | 46.67 | 89.58 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 654 | 793 | 3.94821E-36 | - |
| CDD | cd00303 | retropepsin_like | 347 | 444 | 8.72024E-13 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 343 | 452 | 5.31E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 614 | 820 | 3.78E-49 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 616 | 713 | 1.1E-20 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 714 | 727 | 1.1E-20 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 728 | 799 | 6.9E-23 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 328 | 468 | 1.2E-17 | IPR021109 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048602259.1 | uncharacterized protein LOC125580969, partial [Brassica napus] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G9HH15 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_10756 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |