Basic Information
Locus ID:
gene-QYE76_035694
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 294210328 | 294215423 | - | gene-QYE76_035694 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 98,151.64 Da | 51.51 | 84.38 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 150 | 247 | 4.7915E-13 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 598 | 641 | 5.3E-10 | IPR041577 |
| SUPERFAMILY | SSF50630 | Acid proteases | 146 | 255 | 2.87E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 386 | 647 | 3.22E-65 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 131 | 271 | 9.6E-18 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 544 | 636 | 1.1E-27 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 378 | 464 | 1.1E-13 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 465 | 540 | 1.2E-16 | IPR043128 |
| Coils | Coil | Coil | 837 | 857 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021721980.1 | uncharacterized protein LOC110689504 [Chenopodium quinoa] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2G9HYA0 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |