Basic Information
Locus ID:
gene-QYE76_035619
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
C2H2 type zinc-finger (2 copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 292115701 | 292118741 | + | gene-QYE76_035619 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 45,124.13 Da | 52.98 | 64.44 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12756 | C2H2 type zinc-finger (2 copies) | 175 | 276 | 9.6E-26 | IPR041661 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 2 | 36 | 2.44E-5 | IPR036236 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 160 | 230 | 3.33E-6 | IPR036236 |
| SMART | SM00451 | ZnF_U1_5 | 1 | 35 | 0.0034 | IPR003604 |
| SMART | SM00355 | c2h2final6 | 70 | 94 | 0.16 | IPR013087 |
| SMART | SM00355 | c2h2final6 | 173 | 196 | 140.0 | IPR013087 |
| SMART | SM00355 | c2h2final6 | 4 | 28 | 52.0 | IPR013087 |
| SMART | SM00355 | c2h2final6 | 224 | 251 | 13.0 | IPR013087 |
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 70 | 94 | 9.11994 | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 72 | 94 | - | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 6 | 28 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 164 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31420.1 | Zinc finger protein 622. | 0 |
| RefSeq | XP_047086986.1 | cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like [Lolium rigidum] | 0 |
| Q8H1G5 | Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=REIL1 PE=1 SV=1 | 0 | |
| TrEMBL | F2ECM6 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23695 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8046 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034380 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg20482, Sbi_jg20484, Sbi_jg23290 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17087 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009124 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63545, Sgl68034, Sgl68036 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018284, gene:ENSEOMG00000019919 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013370, CQ.Regalona.r1.2BG0015330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30251950 |
| Apiaceae | Apium graveolens | 1 | Ag9G02740 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G003650, COCNU_11G012820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696939, gene-LOC103696940 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2457.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G14977, Ftri3G03238 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G24500.1, AT4G31420.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000189m.g.v1.0, Thhalv10025366m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g03510.v2.2, Sp7g29280.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g019080.2N, BniB01g048220.2N, BniB02g022510.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2196 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2394 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0267s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15330 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1606 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028709 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12724 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2811, AH06.2813, BH06.2605, BH06.2606, CH06.2912 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0549220, gene-QOZ80_6BG0502770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0729500.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_035619, gene-QYE76_048309 |
| Poaceae | Oryza coarctata | 1 | Oco11G015870 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g47840.1, LOC_Os06g47850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G244300, gene-BS78_10G244400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401168, Pt_Chr0404185, Pt_Chr0405090 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G032350, Chr05G001360, Chr10G021110, Chr11G001510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G722000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG060240, gene_TRIDC7BG053260 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G432100.1, TraesCS7B02G332300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb226230_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40641, nbis-gene-9679 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31048, Zma_g33306 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2393, evm.TU.LG07.1252 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g19980, gene.Posoc03g14800 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.979 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13511 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10847, nbisL1-mrna-8547 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4317, nbisL1-mrna-9217 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.252 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003974 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3689 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7724, nbisL1-mrna-9682 |
| Salicaceae | Populus euphratica | 2 | populus_peu04592, populus_peu13076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604282 |
| Solanaceae | Solanum chilense | 1 | SOLCI001264900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005191, gene-LOC107028750 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.7563_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1518 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00290.v3.1, Zosma03g12290.v3.1 |