Basic Information
Locus ID:
gene-QYE76_035286
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 280576774 | 280586870 | - | gene-QYE76_035286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 97,853.61 Da | 45.70 | 74.31 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 524 | 581 | 5.10627E-7 | - |
| CDD | cd01647 | RT_LTR | 754 | 864 | 1.26719E-43 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 75 | 165 | 2.0E-14 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 522 | 577 | 4.16E-6 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 714 | 864 | 6.78E-48 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 715 | 858 | 1.4E-40 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 796 | 864 | 1.4E-40 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 508 | 588 | 1.0E-8 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 536 | 547 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 400 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050211729.1 | uncharacterized protein LOC126661890 [Mercurialis annua] | 0 |
| P0CT41 | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2T7AA45 | Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |