halophFGD

Basic Information

Locus ID: gene-QYE76_034782

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	263066303	263082136	-	gene-QYE76_034782

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.48	249,828.55 Da	39.33	73.05	-0.57

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	1398	1640	1.4E-75	IPR013103
Pfam	PF03078	ATHILA ORF-1 family	1901	2059	1.3E-8	IPR004312
Pfam	PF00098	Zinc knuckle	1151	1167	7.2E-5	IPR001878
Pfam	PF14223	gag-polypeptide of LTR copia-type	983	1104	1.3E-15	-
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	1141	1172	2.72E-7	IPR036875
SUPERFAMILY	SSF56672	DNA/RNA polymerases	1399	1774	7.11E-26	IPR043502
SMART	SM00343	c2hcfinal6	1151	1167	2.1E-4	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	1152	1167	9.932926	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	595	618	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1114	1140	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1319	1351	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1102	1143	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1321	1338	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	540	618	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	20	39	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	2184	2202	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	553	576	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	406	434	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	2172	2202	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_051228830.1	uncharacterized protein LOC127346586 [Lolium perenne]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	Q7XRW0	OSJNBb0058J09.8 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0058J09.8 PE=4 SV=2

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	64	gene-QYE76_002052, gene-QYE76_003543, gene-QYE76_004726 ... gene-QYE76_006175, gene-QYE76_006719, gene-QYE76_009057, gene-QYE76_010799, gene-QYE76_011556, gene-QYE76_011818, gene-QYE76_012294, gene-QYE76_014773, gene-QYE76_014872, gene-QYE76_015580, gene-QYE76_016249, gene-QYE76_021805, gene-QYE76_021846, gene-QYE76_022185, gene-QYE76_022204, gene-QYE76_027276, gene-QYE76_027565, gene-QYE76_029265, gene-QYE76_029526, gene-QYE76_029916, gene-QYE76_029962, gene-QYE76_030323, gene-QYE76_030324, gene-QYE76_030455, gene-QYE76_031019, gene-QYE76_031708, gene-QYE76_031908, gene-QYE76_032572, gene-QYE76_034782, gene-QYE76_036490, gene-QYE76_036989, gene-QYE76_037826, gene-QYE76_039240, gene-QYE76_039685, gene-QYE76_043780, gene-QYE76_045993, gene-QYE76_046942, gene-QYE76_048980, gene-QYE76_050196, gene-QYE76_051171, gene-QYE76_053874, gene-QYE76_054023, gene-QYE76_054858, gene-QYE76_058568, gene-QYE76_059121, gene-QYE76_059323, gene-QYE76_061610, gene-QYE76_062152, gene-QYE76_063804, gene-QYE76_063805, gene-QYE76_064737, gene-QYE76_064835, gene-QYE76_066506, gene-QYE76_067586, gene-QYE76_068062, gene-QYE76_068188, gene-QYE76_068845, gene-QYE76_069151, gene-QYE76_069485, gene-QYE76_069893, gene-QYE76_071046