Basic Information
Locus ID:
gene-QYE76_034686
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 258873134 | 258882708 | - | gene-QYE76_034686 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 104,019.35 Da | 51.23 | 86.04 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 672 | 790 | 6.30623E-53 | - |
| Pfam | PF10536 | Plant mobile domain | 14 | 124 | 1.5E-9 | IPR019557 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 641 | 739 | 4.4E-32 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 510 | 773 | 1.11E-82 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 587 | 680 | 1.2E-27 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 469 | 584 | 2.2E-23 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 287 | 404 | 1.6E-5 | IPR021109 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A6D2J8K5 | Reverse transcriptase domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS26725 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |