Basic Information
Locus ID:
gene-QYE76_033585
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 220943766 | 220947698 | + | gene-QYE76_033585 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 65,693.05 Da | 49.35 | 86.77 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 266 | 552 | 5.06988E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 552 | 2.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 295 | 4.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 472 | 509 | 0.0046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 340 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 345 | 382 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 254 | 552 | 2.65E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 516 | 7.8E-59 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 587 | 1.3E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 513 | 553 | 2.9E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 2.9E-7 | IPR001680 |
| SMART | SM00668 | ctlh | 94 | 150 | 2.4E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 384 | 424 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 426 | 464 | 97.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 510 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 340 | 7.4E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 520 | 555 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 308 | 349 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.190985 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 304 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 297 | 10.021053 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 150 | 10.470647 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 308 | 345 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 520 | 562 | 15.153581 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_047079273.1 | WD repeat-containing protein 26 homolog [Lolium rigidum] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453JW57 | WD repeat-containing protein 26-like OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology