halophFGD

Basic Information

Locus ID: gene-QYE76_032931

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: DNA RNA polymerases superfamily protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	197261305	197271272	+	gene-QYE76_032931

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.28	195,621.19 Da	44.83	83.35	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	1193	1290	1.14214E-12	-
CDD	cd01647	RT_LTR	479	653	1.45161E-82	-
Pfam	PF03732	Retrotransposon gag protein	893	983	2.8E-8	IPR005162
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	496	654	6.4E-23	IPR000477
Pfam	PF00098	Zinc knuckle	289	305	9.3E-6	IPR001878
Pfam	PF03732	Retrotransposon gag protein	88	182	3.2E-18	IPR005162
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	717	806	1.5E-30	IPR041577
Pfam	PF08284	Retroviral aspartyl protease	359	387	1.7E-5	-
SUPERFAMILY	SSF56672	DNA/RNA polymerases	1460	1522	4.0E-11	IPR043502
SUPERFAMILY	SSF56672	DNA/RNA polymerases	419	806	2.33E-152	IPR043502
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	283	309	2.72E-6	IPR036875
SUPERFAMILY	SSF50630	Acid proteases	1190	1298	6.65E-5	IPR021109
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	441	580	3.8E-84	-
Gene3D	G3DSA:3.30.70.270	-	520	654	3.8E-84	IPR043128
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	1451	1563	7.0E-16	-
Gene3D	G3DSA:3.30.70.270	-	664	754	1.9E-31	IPR043128
Gene3D	G3DSA:4.10.60.10	-	283	312	3.1E-5	-
Gene3D	G3DSA:2.40.70.10	Acid Proteases	1174	1314	5.8E-18	IPR021109
SMART	SM00343	c2hcfinal6	289	305	5.3E-4	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	290	305	9.998857	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	1558	1573	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	240	279	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1545	1580	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	212	279	-	-
Coils	Coil	Coil	197	217	-	-
Coils	Coil	Coil	1692	1712	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_051211622.1	uncharacterized protein LOC127329119 [Lolium perenne]
Swiss-Prot	P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
TrEMBL	Q2QUJ5	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g16050 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	203	gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... gene-QYE76_001923, gene-QYE76_002013, gene-QYE76_002313, gene-QYE76_002482, gene-QYE76_002497, gene-QYE76_002538, gene-QYE76_002715, gene-QYE76_003008, gene-QYE76_003118, gene-QYE76_003166, gene-QYE76_003486, gene-QYE76_003766, gene-QYE76_004082, gene-QYE76_004566, gene-QYE76_004715, gene-QYE76_005068, gene-QYE76_005221, gene-QYE76_005504, gene-QYE76_005835, gene-QYE76_006810, gene-QYE76_007854, gene-QYE76_009754, gene-QYE76_009817, gene-QYE76_010620, gene-QYE76_010780, gene-QYE76_010949, gene-QYE76_010963, gene-QYE76_011002, gene-QYE76_011280, gene-QYE76_011417, gene-QYE76_011674, gene-QYE76_011687, gene-QYE76_011775, gene-QYE76_011922, gene-QYE76_012139, gene-QYE76_012197, gene-QYE76_012685, gene-QYE76_012755, gene-QYE76_012837, gene-QYE76_012896, gene-QYE76_013414, gene-QYE76_013929, gene-QYE76_015291, gene-QYE76_015790, gene-QYE76_016556, gene-QYE76_018973, gene-QYE76_019606, gene-QYE76_019931, gene-QYE76_020219, gene-QYE76_020338, gene-QYE76_020444, gene-QYE76_020842, gene-QYE76_021728, gene-QYE76_022036, gene-QYE76_022222, gene-QYE76_022805, gene-QYE76_023384, gene-QYE76_023460, gene-QYE76_023851, gene-QYE76_024192, gene-QYE76_024664, gene-QYE76_025680, gene-QYE76_025943, gene-QYE76_026121, gene-QYE76_026131, gene-QYE76_026203, gene-QYE76_027608, gene-QYE76_027648, gene-QYE76_028543, gene-QYE76_028760, gene-QYE76_028853, gene-QYE76_028945, gene-QYE76_028992, gene-QYE76_030015, gene-QYE76_030141, gene-QYE76_030388, gene-QYE76_030643, gene-QYE76_030956, gene-QYE76_030974, gene-QYE76_031328, gene-QYE76_031331, gene-QYE76_031372, gene-QYE76_031650, gene-QYE76_031744, gene-QYE76_031800, gene-QYE76_031856, gene-QYE76_031950, gene-QYE76_032322, gene-QYE76_032583, gene-QYE76_032754, gene-QYE76_032931, gene-QYE76_033132, gene-QYE76_033183, gene-QYE76_033188, gene-QYE76_034352, gene-QYE76_034498, gene-QYE76_034740, gene-QYE76_035694, gene-QYE76_035780, gene-QYE76_036777, gene-QYE76_037456, gene-QYE76_037509, gene-QYE76_038394, gene-QYE76_038683, gene-QYE76_039093, gene-QYE76_039775, gene-QYE76_039940, gene-QYE76_040362, gene-QYE76_041075, gene-QYE76_041290, gene-QYE76_041315, gene-QYE76_041401, gene-QYE76_041430, gene-QYE76_041864, gene-QYE76_041956, gene-QYE76_042418, gene-QYE76_042656, gene-QYE76_042737, gene-QYE76_042766, gene-QYE76_043249, gene-QYE76_043593, gene-QYE76_043638, gene-QYE76_043655, gene-QYE76_043783, gene-QYE76_044233, gene-QYE76_044264, gene-QYE76_044330, gene-QYE76_044615, gene-QYE76_044685, gene-QYE76_044765, gene-QYE76_044855, gene-QYE76_045312, gene-QYE76_045646, gene-QYE76_045677, gene-QYE76_045706, gene-QYE76_046425, gene-QYE76_047698, gene-QYE76_048773, gene-QYE76_049187, gene-QYE76_049253, gene-QYE76_049578, gene-QYE76_049726, gene-QYE76_050465, gene-QYE76_050825, gene-QYE76_050890, gene-QYE76_050997, gene-QYE76_051044, gene-QYE76_051161, gene-QYE76_051501, gene-QYE76_051563, gene-QYE76_051686, gene-QYE76_051925, gene-QYE76_051993, gene-QYE76_052082, gene-QYE76_052241, gene-QYE76_052691, gene-QYE76_053008, gene-QYE76_053090, gene-QYE76_053100, gene-QYE76_053119, gene-QYE76_053410, gene-QYE76_053455, gene-QYE76_053686, gene-QYE76_054059, gene-QYE76_054828, gene-QYE76_054911, gene-QYE76_055188, gene-QYE76_055605, gene-QYE76_055788, gene-QYE76_056442, gene-QYE76_056905, gene-QYE76_057167, gene-QYE76_057448, gene-QYE76_057829, gene-QYE76_058616, gene-QYE76_059518, gene-QYE76_059829, gene-QYE76_061157, gene-QYE76_061968, gene-QYE76_064162, gene-QYE76_064314, gene-QYE76_064397, gene-QYE76_064465, gene-QYE76_064788, gene-QYE76_064901, gene-QYE76_065325, gene-QYE76_065474, gene-QYE76_065724, gene-QYE76_065747, gene-QYE76_065818, gene-QYE76_067269, gene-QYE76_067697, gene-QYE76_068411, gene-QYE76_068996, gene-QYE76_069069, gene-QYE76_069196, gene-QYE76_069510, gene-QYE76_069646, gene-QYE76_070251, gene-QYE76_070568